Find hotels near Mission Bay, San Diego from $71 total

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Compare 7,168 hotels close to Mission Bay with room rates, reviews, and availability. Most hotels are fully refundable.

The Dana on Mission Bay

3.5 star property
8.8 out of 10, Excellent, (3404)
"Loved the location and we have already booked to come back!"
$179 nightly
The price is $206
May 18 - May 19
Total includes taxes and fees
The Dana on Mission Bay

Paradise Point Resort & Spa

4.0 star property
8.6 out of 10, Excellent, (2183)
"I would thoroughly recommend this resort to anyone it was wonderful!"
$244 nightly
The price is $281
May 26 - May 27
Total includes taxes and fees
Paradise Point Resort & Spa

Holiday Inn Express San Diego - SeaWorld Area by IHG

2.5 star property
8.8 out of 10, Excellent, (1012)
"All the staff was great! "
$153 nightly
The price is $176
May 26 - May 27
Total includes taxes and fees
Holiday Inn Express San Diego - SeaWorld Area by IHG

Bahia Resort Hotel

3.5 star property
8.6 out of 10, Excellent, (1548)
"We enjoyed our stay. Would definitely stay there again. "
$236 nightly
The price is $272
May 19 - May 20
Total includes taxes and fees
Bahia Resort Hotel

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

2.5 star property
8.8 out of 10, Excellent, (701)
"this hotel is very convenience to all the locations "
$161 nightly
The price is $185
May 27 - May 28
Total includes taxes and fees
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Hyatt Regency Mission Bay Spa and Marina

4.0 star property
8.4 out of 10, Very Good, (1471)
"Great place for a family vaca! "
$186 nightly
The price is $214
May 26 - May 27
Total includes taxes and fees
Hyatt Regency Mission Bay Spa and Marina

San Diego Mission Bay Resort

4.0 star property
8.2 out of 10, Very Good, (1223)
"Great stay "
$218 nightly
The price is $251
May 18 - May 19
Total includes taxes and fees
San Diego Mission Bay Resort

Comfort Inn Sea World Area

3.5 star property
8.6 out of 10, Excellent, (2114)
"Loved our stay "
$109 nightly
The price is $126
May 20 - May 21
Total includes taxes and fees
Comfort Inn Sea World Area

Catamaran Resort and Spa

4.0 star property
8.2 out of 10, Very Good, (1022)
"Great for families"
$242 nightly
The price is $279
May 18 - May 19
Total includes taxes and fees
Catamaran Resort and Spa

GreenTree Inn San Diego Mission Bay

2.5 star property
8.0 out of 10, Very Good, (1407)
"Delicious breakfast, easy parking and clean rooms"
$99 nightly
The price is $114
May 21 - May 22
Total includes taxes and fees
GreenTree Inn San Diego Mission Bay

SureStay Hotel by Best Western San Diego Pacific Beach

2.5 star property
8.0 out of 10, Very Good, (1069)
"Was quiet and had a good view "
$88 nightly
The price is $99
May 26 - May 27
Total includes taxes and fees
SureStay Hotel by Best Western San Diego Pacific Beach

ITH Beach Bungalow Surf Hostel

2.0 star property
7.8 out of 10, Good, (224)
"This is a hostel, so if you want 4 stars go somewhere else. The property could use quite a bit of TLC, but the linens and rooms were clean. The staff were awesome and the overall vibe of the hostel was exactly what I hoped and more. The staff do fun nights and simple meals. Overall I really enjoyed my stay. "
$140 nightly
The price is $158
May 21 - May 22
Total includes taxes and fees
ITH Beach Bungalow Surf Hostel

Surfer Beach Hotel

3.0 star property
8.0 out of 10, Very Good, (1007)
"Great place. Great location and friendly staff. Want to come back asap"
$156 nightly
The price is $177
May 21 - May 22
Total includes taxes and fees
Surfer Beach Hotel

Mission Bay Inn San Diego

2.5 star property
7.2 out of 10, Good, (1189)
"I had stayed here before the whole renovation. And I thought it was a great stay and the service at the front desk was very helpful and they had free breakfast in the mornings. I recently just stayed here while they were still in renovations and it was amazing to see Our room, remodeled with new amenities and higher quality furnishings in the room. It was beautiful and the best few nights we’ve stayed so far."
$80 nightly
The price is $92
May 26 - May 27
Total includes taxes and fees
Mission Bay Inn San Diego

Wyndham Garden San Diego Near SeaWorld

3.0 star property
7.2 out of 10, Good, (3876)
"Great place to stay."
$94 nightly
The price is $108
May 26 - May 27
Total includes taxes and fees
Wyndham Garden San Diego Near SeaWorld

Heritage Inn San Diego

2.0 star property
6.6 out of 10, (1019)
"Close to SeaWorld and the beaches"
$62 nightly
The price is $72
May 19 - May 20
Total includes taxes and fees
Heritage Inn San Diego

E-Z 8 Motel Old Town

2.5 star property
6.2 out of 10, (2044)
"Nice stay slept well"
$62 nightly
The price is $71
May 18 - May 19
Total includes taxes and fees
E-Z 8 Motel Old Town

Pacific Terrace Hotel

4.0 star property
9.6 out of 10, Exceptional, (1006)
"Great service! Great place to stay!"
$317 nightly
The price is $365
Jun 4 - Jun 5
Total includes taxes and fees
Pacific Terrace Hotel

Samesun Ocean Beach - Hostel

2.0 star property
9.6 out of 10, Exceptional, (260)
"Great location and great value."
$144 nightly
The price is $162
May 26 - May 27
Total includes taxes and fees
Samesun Ocean Beach - Hostel

City24 Hotel Little Italy Mission Hill

4.5 star property
9.6 out of 10, Exceptional, (63)
"Amazing place!! Will book it in the future."
$178 nightly
The price is $200
May 26 - May 27
Total includes taxes and fees
City24 Hotel Little Italy Mission Hill
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Frequently asked questions

What's the area like around Mission Bay?

Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, check out the 88 hotels and other accommodations you'll find within a mile.

Where is the best place to stay near Mission Bay?

San Diego Mission Bay Resort is one of the top choices for your stay based on our traveler data, and this hotel offers a full-service spa and 2 restaurants. It's located just a short 1 mi (1.6 km) from Mission Bay. Another good option is Paradise Point Resort & Spa, located just 0.7 mi (1.2 km) away.

How many hotels can I expect to find close to Mission Bay?

Expedia has 88 hotels and other accommodations within a mile from Mission Bay.

If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?

Yes! You'll find that most hotel bookings are fully refundable provided that you cancel before the hotel’s cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If your reservation is non-refundable, you may still be able to cancel and be given a refund within 24 hours of booking. Enter your dates, click on "Search", then filter by "fully refundable" to review the top deals on offer near Mission Bay.

Where can I learn more about changing or cancelling my trip in the area near Mission Bay?

For more details about picking new dates or cancelling your stay near Mission Bay, head over to our customer service page.

What can I see and do near Mission Bay?

Study the collections at Maritime Museum of San Diego, Junipero Serra Museum, or Whaley House Museum. Casa de Machado y Stewart, McCoy Museum House, and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company, and Red Spade Theater.